Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5-dehydro-4-deoxy-d-glucuronate isomerase | DWZ36_09060 | Not Available | Negative | 2164837 - 2165679 | 31850.9 |
| d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase | DWZ36_09065 | Not Available | Negative | 2165850 - 2167250 | 52306.5 |
| dihydrolipoyl dehydrogenase | DWZ36_09070 | Not Available | Negative | 2167250 - 2168590 | 47635.7 |
| hypothetical protein | DWZ36_09075 | Not Available | Negative | 2168640 - 2169050 | 15494.5 |
| orf6n domain-containing protein | DWZ36_09080 | Not Available | Negative | 2169126 - 2169686 | 21498.0 |
| l-aspartate oxidase | DWZ36_09085 | Not Available | Positive | 2169842 - 2171422 | 58967.6 |
| aaa family atpase | DWZ36_09090 | Not Available | Positive | 2171672 - 2173399 | 68010.0 |
| pectate lyase | DWZ36_09100 | Not Available | Negative | 2174814 - 2176955 | 81657.4 |
| hypothetical protein | DWZ36_09105 | Not Available | Positive | 2176939 - 2177193 | 10260.6 |
| hypothetical protein | DWZ36_09110 | Not Available | Negative | 2177224 - 2179533 | 86340.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

