Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad(p)-dependent oxidoreductase | DWZ36_08960 | Not Available | Negative | 2138595 - 2139641 | 40078.3 |
| cation transporter | DWZ36_08965 | Not Available | Negative | 2139652 - 2140554 | 32879.3 |
| ribonuclease r | DWZ36_08970 | Not Available | Positive | 2140685 - 2142832 | 81983.4 |
| serine acetyltransferase | DWZ36_08975 | Not Available | Positive | 2143133 - 2144041 | 32799.2 |
| type ii toxin-antitoxin system hicb family antitoxin | DWZ36_08980 | Not Available | Positive | 2144192 - 2144383 | 7388.35 |
| rna methyltransferase | DWZ36_08985 | Not Available | Positive | 2144895 - 2146343 | 56232.4 |
| s9 family peptidase | DWZ36_08990 | Not Available | Positive | 2146350 - 2148563 | 83651.4 |
| phosphoribosylamine--glycine ligase | DWZ36_08995 | Not Available | Positive | 2148579 - 2149847 | 45594.1 |
| hypothetical protein | DWZ36_09000 | Not Available | Positive | 2149866 - 2150801 | 35926.8 |
| deda family protein | DWZ36_09005 | Not Available | Positive | 2150777 - 2151244 | 17015.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

