Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux rnd transporter periplasmic adaptor subunit | DWZ36_08910 | Not Available | Positive | 2124807 - 2125937 | 41358.6 |
| multidrug efflux rnd transporter permease subunit | DWZ36_08915 | Not Available | Positive | 2125942 - 2129058 | 112541.0 |
| mechanosensitive ion channel family protein | DWZ36_08920 | Not Available | Positive | 2129175 - 2130368 | 45202.9 |
| sensor histidine kinase | DWZ36_08925 | Not Available | Negative | 2130487 - 2131276 | 29356.8 |
| susc/raga family protein | DWZ36_08930 | Not Available | Positive | 2131277 - 2132255 | 37141.6 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_08935 | Not Available | Positive | 2132271 - 2133821 | 58752.9 |
| u32 family peptidase | DWZ36_08940 | Not Available | Negative | 2134109 - 2135371 | 47014.9 |
| trna dihydrouridine synthase dusb | DWZ36_08945 | Not Available | Positive | 2135522 - 2136511 | 37212.5 |
| duf2807 domain-containing protein | DWZ36_08950 | Not Available | Negative | 2136599 - 2137450 | 29104.1 |
| phosphatase pap2 family protein | DWZ36_08955 | Not Available | Negative | 2137627 - 2138604 | 37786.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

