Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| co-chaperone groes | DWZ36_08760 | Not Available | Positive | 2095969 - 2096241 | 9740.92 |
| molecular chaperone groel | DWZ36_08765 | Not Available | Positive | 2096283 - 2097920 | 58147.1 |
| Trna-thr | Not Available | Not Available | Positive | 2098168 - 2098241 | Not Available |
| mate family efflux transporter | DWZ36_08775 | Not Available | Positive | 2098394 - 2099746 | 49534.5 |
| crp/fnr family transcriptional regulator | DWZ36_08780 | Not Available | Positive | 2099782 - 2100366 | 22223.6 |
| carbonic anhydrase | DWZ36_08785 | Not Available | Positive | 2100557 - 2101096 | 19937.5 |
| glycosyl hydrolase family 109 protein 1 | DWZ36_08790 | Not Available | Negative | 2101220 - 2102635 | 53465.8 |
| nudix domain-containing protein | DWZ36_08795 | Not Available | Negative | 2103330 - 2103830 | 19016.2 |
| histidine ammonia-lyase | DWZ36_08800 | Not Available | Negative | 2103949 - 2105445 | 55208.9 |
| methenyltetrahydrofolate cyclohydrolase | DWZ36_08805 | Not Available | Negative | 2105480 - 2106103 | 22967.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

