Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-met | Not Available | Not Available | Positive | 2052261 - 2052336 | Not Available |
| tetr/acrr family transcriptional regulator | DWZ36_08610 | Not Available | Positive | 2052568 - 2053167 | 22662.3 |
| 3-oxoacyl-[acyl-carrier-protein] reductase | DWZ36_08615 | Not Available | Positive | 2053199 - 2053945 | 25964.4 |
| rna pseudouridine synthase | DWZ36_08620 | Not Available | Positive | 2053947 - 2054618 | 25505.8 |
| hypothetical protein | DWZ36_08625 | Not Available | Negative | 2054683 - 2054988 | 10782.8 |
| sigma-54-dependent fis family transcriptional regulator | DWZ36_08630 | Not Available | Negative | 2055273 - 2056655 | 51219.5 |
| hybrid sensor histidine kinase/response regulator | DWZ36_08635 | Not Available | Negative | 2056757 - 2059324 | 96900.3 |
| mate family efflux transporter | DWZ36_08640 | Not Available | Negative | 2059338 - 2060648 | 48593.3 |
| insulinase family protein | DWZ36_08645 | Not Available | Negative | 2060742 - 2061986 | 47363.6 |
| peptidylprolyl isomerase | DWZ36_08650 | Not Available | Negative | 2061999 - 2062844 | 31477.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

