Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | DWZ36_08555 | Not Available | Negative | 2037057 - 2037731 | 24767.0 |
| abc transporter permease | DWZ36_08560 | Not Available | Negative | 2037751 - 2040150 | 91431.7 |
| abc transporter permease | DWZ36_08565 | Not Available | Negative | 2040171 - 2042540 | 90124.9 |
| abc transporter permease | DWZ36_08570 | Not Available | Negative | 2042554 - 2044950 | 92726.7 |
| hlyd family efflux transporter periplasmic adaptor subunit | DWZ36_08575 | Not Available | Negative | 2044961 - 2046211 | 48108.4 |
| tolc family protein | DWZ36_08580 | Not Available | Negative | 2046295 - 2047764 | 55871.3 |
| sel1 repeat family protein | DWZ36_08585 | Not Available | Negative | 2047814 - 2048737 | 34904.6 |
| sigma-54-dependent fis family transcriptional regulator | DWZ36_08590 | Not Available | Positive | 2048961 - 2050328 | 51877.1 |
| atp-binding protein | DWZ36_08595 | Not Available | Positive | 2050325 - 2051656 | 50551.9 |
| Trna-pro | Not Available | Not Available | Positive | 2051816 - 2051890 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

