Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ36_08505 | Not Available | Positive | 2024163 - 2024657 | 18386.1 |
| had family phosphatase | DWZ36_08510 | Not Available | Positive | 2024816 - 2025436 | 23419.9 |
| yjgp/yjgq family permease | DWZ36_08515 | Not Available | Negative | 2025437 - 2026609 | 45473.9 |
| trna guanosine(34) transglycosylase tgt | DWZ36_08520 | Not Available | Negative | 2026620 - 2027750 | 42665.6 |
| endopeptidase la | DWZ36_08525 | Not Available | Negative | 2027753 - 2030230 | 92607.4 |
| trna (adenosine(37)-n6)-methyltransferase trmm | DWZ36_08530 | Not Available | Positive | 2030412 - 2031116 | 26207.4 |
| diacylglycerol kinase family lipid kinase | DWZ36_08535 | Not Available | Negative | 2031197 - 2032231 | 38175.2 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | DWZ36_08540 | Not Available | Positive | 2032476 - 2033663 | 44190.9 |
| dmt family transporter | DWZ36_08545 | Not Available | Positive | 2033751 - 2034638 | 31821.8 |
| abc transporter permease | DWZ36_08550 | Not Available | Negative | 2034646 - 2036997 | 89879.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

