Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rhamnulose-1-phosphate aldolase | DWZ36_00770 | Not Available | Negative | 176042 - 176851 | 30253.7 |
| l-rhamnose/proton symporter rhat | DWZ36_00775 | Not Available | Negative | 176937 - 177956 | 36101.1 |
| l-rhamnose isomerase | DWZ36_00780 | Not Available | Negative | 178049 - 179305 | 47536.4 |
| rhamnulokinase | DWZ36_00785 | Not Available | Negative | 179345 - 180823 | 55034.9 |
| arginine repressor | DWZ36_00790 | Not Available | Positive | 181130 - 181606 | 17529.3 |
| n-acetyltransferase | DWZ36_00795 | Not Available | Positive | 181629 - 182186 | 20661.0 |
| argininosuccinate synthase | DWZ36_00800 | Not Available | Positive | 182287 - 183495 | 45126.7 |
| n-acetyl-gamma-glutamyl-phosphate reductase | DWZ36_00805 | Not Available | Positive | 183501 - 184469 | 36000.4 |
| aminotransferase class iii-fold pyridoxal phosphate-dependent enzyme | DWZ36_00810 | Not Available | Positive | 184483 - 185607 | 41008.9 |
| pyrroline-5-carboxylate reductase | DWZ36_00815 | Not Available | Positive | 185791 - 186564 | 27215.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

