Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| membrane protein insertase yidc | DWZ36_08125 | Not Available | Positive | 1939598 - 1941463 | 70945.9 |
| s9 family peptidase | DWZ36_08135 | Not Available | Positive | 1941690 - 1943810 | 79823.9 |
| rlua family pseudouridine synthase | DWZ36_08140 | Not Available | Negative | 1944929 - 1945855 | 35642.1 |
| 23s rrna (uracil(1939)-c(5))-methyltransferase rlmd | DWZ36_08145 | Not Available | Negative | 1945900 - 1947321 | 54010.2 |
| pyruvate, phosphate dikinase | DWZ36_08150 | Not Available | Positive | 1947520 - 1950246 | 100040.0 |
| fused gamma-glutamyl-gamma-aminobutyrate hydrolase/peptidase | DWZ36_08155 | Not Available | Positive | 1950379 - 1952235 | 68726.0 |
| hypothetical protein | DWZ36_08160 | Not Available | Positive | 1952512 - 1952949 | 17481.4 |
| abc transporter permease | DWZ36_08165 | Not Available | Negative | 1953010 - 1955322 | 87510.2 |
| abc transporter atp-binding protein | DWZ36_08170 | Not Available | Negative | 1955342 - 1956016 | 24853.2 |
| abc transporter permease | DWZ36_08175 | Not Available | Negative | 1956051 - 1958360 | 86414.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

