Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mate family efflux transporter | DWZ36_08075 | Not Available | Positive | 1927898 - 1929241 | 49290.3 |
| ompa family protein | DWZ36_08080 | Not Available | Positive | 1929290 - 1930009 | 24484.1 |
| monofunctional biosynthetic peptidoglycan transglycosylase | DWZ36_08085 | Not Available | Positive | 1930138 - 1930860 | 27910.3 |
| duf1460 domain-containing protein | DWZ36_08090 | Not Available | Negative | 1930832 - 1931716 | 33269.5 |
| biotin/lipoyl-binding protein | DWZ36_08095 | Not Available | Negative | 1931842 - 1933617 | 66738.8 |
| rna polymerase sigma factor | DWZ36_08100 | Not Available | Negative | 1933807 - 1934310 | 19667.6 |
| trimeric intracellular cation channel family protein | DWZ36_08105 | Not Available | Negative | 1934469 - 1935083 | 22186.8 |
| udp-n-acetyl glucosamine 2-epimerase | DWZ36_08110 | Not Available | Positive | 1935167 - 1936255 | 40202.9 |
| duf3078 domain-containing protein | DWZ36_08115 | Not Available | Negative | 1936356 - 1937750 | 53456.6 |
| ctp synthase | DWZ36_08120 | Not Available | Positive | 1937960 - 1939558 | 60081.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

