Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| patatin | DWZ36_07865 | Not Available | Positive | 1888863 - 1891172 | 87649.6 |
| Trna-arg | Not Available | Not Available | Positive | 1891261 - 1891337 | Not Available |
| Trna-arg | Not Available | Not Available | Positive | 1891387 - 1891463 | Not Available |
| Trna-arg | Not Available | Not Available | Positive | 1891481 - 1891557 | Not Available |
| 4-hydroxy-tetrahydrodipicolinate synthase | DWZ36_07885 | Not Available | Negative | 1891923 - 1892816 | 32789.2 |
| dna ligase (nad(+)) liga | DWZ36_07890 | Not Available | Negative | 1892918 - 1894915 | 75145.7 |
| trna (guanosine(37)-n1)-methyltransferase trmd | DWZ36_07895 | Not Available | Positive | 1895014 - 1895688 | 25441.7 |
| dihydroorotate dehydrogenase | DWZ36_07900 | Not Available | Negative | 1896054 - 1896965 | 32363.4 |
| dihydroorotate dehydrogenase electron transfer subunit | DWZ36_07905 | Not Available | Negative | 1896953 - 1897732 | 28483.2 |
| xre family transcriptional regulator | DWZ36_07910 | Not Available | Negative | 1897826 - 1898278 | 17319.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

