Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DWZ36_07810 | Not Available | Negative | 1872148 - 1875045 | 108097.0 |
| hypothetical protein | DWZ36_07815 | Not Available | Negative | 1875126 - 1875530 | 15580.9 |
| 3-dehydroquinate synthase | DWZ36_07820 | Not Available | Positive | 1875628 - 1876689 | 39864.2 |
| arac family transcriptional regulator | DWZ36_07825 | Not Available | Positive | 1876963 - 1877823 | 34056.9 |
| Trna-pro | Not Available | Not Available | Positive | 1877924 - 1878001 | Not Available |
| dde transposase | DWZ36_07840 | Not Available | Positive | 1878616 - 1879593 | 38374.7 |
| hypothetical protein | DWZ36_07845 | Not Available | Negative | 1879856 - 1881073 | 45922.7 |
| dna gyrase subunit a | DWZ36_07850 | Not Available | Negative | 1881104 - 1883671 | 96391.0 |
| atp-dependent clp protease atp-binding subunit | DWZ36_07855 | Not Available | Positive | 1884036 - 1886552 | 93876.9 |
| molecular chaperone htpg | DWZ36_07860 | Not Available | Positive | 1886687 - 1888732 | 78183.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

