Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysm peptidoglycan-binding domain-containing protein | DWZ36_07760 | Not Available | Positive | 1858915 - 1860177 | 47706.3 |
| bifunctional (p)ppgpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | DWZ36_07765 | Not Available | Positive | 1860279 - 1862549 | 86308.0 |
| merr family transcriptional regulator | DWZ36_07770 | Not Available | Negative | 1862641 - 1862988 | 13742.9 |
| m23 family peptidase | DWZ36_07775 | Not Available | Negative | 1863022 - 1863990 | 36405.9 |
| alanine--trna ligase | DWZ36_07780 | Not Available | Positive | 1864130 - 1866748 | 97427.7 |
| duf2075 domain-containing protein | DWZ36_07785 | Not Available | Negative | 1867070 - 1868488 | 53950.6 |
| hypothetical protein | DWZ36_07790 | Not Available | Positive | 1868586 - 1869272 | 25516.8 |
| duf3822 family protein | DWZ36_07795 | Not Available | Positive | 1869275 - 1870099 | 32356.9 |
| methyltransferase domain-containing protein | DWZ36_07800 | Not Available | Positive | 1870090 - 1870650 | 21359.3 |
| cardiolipin synthase | DWZ36_07805 | Not Available | Negative | 1870619 - 1872055 | 55420.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

