Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-gln | Not Available | Not Available | Positive | 1849743 - 1849813 | Not Available |
| ribosome silencing factor | DWZ36_07715 | Not Available | Positive | 1850134 - 1850493 | 13409.9 |
| atp-dependent metallopeptidase ftsh/yme1/tma family protein | DWZ36_07720 | Not Available | Positive | 1850511 - 1852517 | 74632.1 |
| phosphatidate cytidylyltransferase | DWZ36_07725 | Not Available | Positive | 1852677 - 1853516 | 30824.3 |
| hypothetical protein | DWZ36_07730 | Not Available | Negative | 1853508 - 1854242 | 27504.9 |
| lipid-a-disaccharide synthase | DWZ36_07735 | Not Available | Negative | 1854299 - 1855438 | 43081.6 |
| 5'/3'-nucleotidase sure | DWZ36_07740 | Not Available | Negative | 1855435 - 1856208 | 28332.7 |
| para family protein | DWZ36_07745 | Not Available | Positive | 1856466 - 1857233 | 28003.1 |
| parb/repb/spo0j family partition protein | DWZ36_07750 | Not Available | Positive | 1857237 - 1858133 | 33345.2 |
| hypothetical protein | DWZ36_07755 | Not Available | Positive | 1858203 - 1858910 | 26895.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

