Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | DWZ36_00715 | Not Available | Positive | 160478 - 161776 | 47974.8 |
| glycosidase | DWZ36_00720 | Not Available | Positive | 161809 - 162810 | 37625.8 |
| gfo/idh/moca family oxidoreductase | DWZ36_00725 | Not Available | Positive | 163269 - 164510 | 47399.8 |
| duf4974 domain-containing protein | DWZ36_00730 | Not Available | Negative | 164633 - 165643 | 38652.1 |
| rna polymerase sigma-70 factor | DWZ36_00735 | Not Available | Negative | 165640 - 166167 | 20764.8 |
| duf4981 domain-containing protein | DWZ36_00745 | Not Available | Negative | 169184 - 172279 | 117557.0 |
| ion transporter | DWZ36_00750 | Not Available | Positive | 172395 - 173252 | 32709.8 |
| lytic transglycosylase domain-containing protein | DWZ36_00755 | Not Available | Negative | 173278 - 174276 | 37405.8 |
| arac family transcriptional regulator | DWZ36_00760 | Not Available | Negative | 174284 - 175204 | 35143.8 |
| duf4251 domain-containing protein | DWZ36_00765 | Not Available | Negative | 175336 - 175833 | 18480.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

