Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1573 domain-containing protein | DWZ36_07650 | Not Available | Negative | 1833224 - 1834300 | 39188.1 |
| hypothetical protein | DWZ36_07655 | Not Available | Positive | 1834431 - 1834862 | 17029.8 |
| alpha-2-macroglobulin | DWZ36_07660 | Not Available | Negative | 1834923 - 1840601 | 213610.0 |
| transcriptional regulator | DWZ36_07670 | Not Available | Negative | 1841089 - 1841304 | 7860.67 |
| nucleoside deaminase | DWZ36_07680 | Not Available | Positive | 1842217 - 1842684 | 16967.2 |
| aminoacyl-histidine dipeptidase | DWZ36_07685 | Not Available | Negative | 1842746 - 1844206 | 53173.6 |
| upf0104 family protein | DWZ36_07690 | Not Available | Negative | 1844203 - 1845207 | 37225.6 |
| ribosomal rna small subunit methyltransferase a | DWZ36_07695 | Not Available | Positive | 1845306 - 1846148 | 31940.9 |
| magnesium transporter | DWZ36_07700 | Not Available | Positive | 1846180 - 1847520 | 49694.8 |
| duf349 domain-containing protein | DWZ36_07705 | Not Available | Positive | 1847781 - 1849589 | 70097.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

