Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ36_07600 | Not Available | Negative | 1825141 - 1825602 | 16708.9 |
| mota/tolq/exbb proton channel family protein | DWZ36_07605 | Not Available | Negative | 1825610 - 1826383 | 27566.2 |
| Trna-ser | Not Available | Not Available | Positive | 1826467 - 1826554 | Not Available |
| tatd family deoxyribonuclease | DWZ36_07615 | Not Available | Negative | 1826722 - 1827495 | 29324.4 |
| polyprenyl synthetase family protein | DWZ36_07620 | Not Available | Negative | 1827497 - 1828474 | 36812.8 |
| energy transducer tonb | DWZ36_07625 | Not Available | Negative | 1828556 - 1829239 | 25649.9 |
| cytidylate kinase | DWZ36_07630 | Not Available | Positive | 1829425 - 1830114 | 25702.8 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | DWZ36_07635 | Not Available | Positive | 1830107 - 1830973 | 32600.1 |
| 6-phosphofructokinase | DWZ36_07640 | Not Available | Positive | 1831055 - 1832035 | 35428.5 |
| methylmalonyl co-a mutase-associated gtpase meab | DWZ36_07645 | Not Available | Negative | 1832124 - 1833221 | 40361.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

