Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ36_07545 | Not Available | Positive | 1818361 - 1819068 | 26011.5 |
| sigma-70 family rna polymerase sigma factor | DWZ36_07550 | Not Available | Positive | 1819071 - 1819619 | 21091.3 |
| duf5056 domain-containing protein | DWZ36_07555 | Not Available | Positive | 1819603 - 1819932 | 12355.1 |
| thymidylate synthase | DWZ36_07560 | Not Available | Positive | 1820014 - 1820808 | 30479.4 |
| dihydrofolate reductase | DWZ36_07565 | Not Available | Positive | 1820892 - 1821386 | 18849.7 |
| asnc family transcriptional regulator | DWZ36_07570 | Not Available | Negative | 1821390 - 1821866 | 17875.6 |
| peptidase m64 | DWZ36_07575 | Not Available | Positive | 1821895 - 1823280 | 52173.5 |
| gnat family n-acetyltransferase | DWZ36_07580 | Not Available | Positive | 1823315 - 1823851 | 21182.4 |
| biopolymer transporter exbd | DWZ36_07590 | Not Available | Negative | 1824043 - 1824507 | 17906.9 |
| biopolymer transporter exbd | DWZ36_07595 | Not Available | Negative | 1824507 - 1825097 | 22472.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

