Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nitroreductase | DWZ36_07440 | Not Available | Negative | 1795300 - 1795800 | 18878.7 |
| had family hydrolase | DWZ36_07445 | Not Available | Positive | 1795863 - 1796516 | 24307.2 |
| 6-phosphofructokinase | DWZ36_07450 | Not Available | Negative | 1796526 - 1797506 | 35283.2 |
| doxx family protein | DWZ36_07455 | Not Available | Positive | 1797766 - 1798206 | 16170.6 |
| duf4435 domain-containing protein | DWZ36_07460 | Not Available | Negative | 1798212 - 1799207 | 39179.5 |
| atp-binding cassette domain-containing protein | DWZ36_07465 | Not Available | Negative | 1799229 - 1800050 | 31108.5 |
| dmt family transporter | DWZ36_07470 | Not Available | Positive | 1800133 - 1801059 | 33113.5 |
| sdr family nad(p)-dependent oxidoreductase | DWZ36_07475 | Not Available | Negative | 1801167 - 1802027 | 31842.1 |
| nadh:flavin oxidoreductase | DWZ36_07480 | Not Available | Negative | 1802024 - 1803247 | 45546.4 |
| duf1295 domain-containing protein | DWZ36_07485 | Not Available | Negative | 1803310 - 1804074 | 29496.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

