Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| porin family protein | DWZ36_07380 | Not Available | Negative | 1783954 - 1784415 | 17451.8 |
| hypothetical protein | DWZ36_07385 | Not Available | Negative | 1784437 - 1784958 | 21224.9 |
| port family protein | DWZ36_07390 | Not Available | Negative | 1785324 - 1785962 | 22822.1 |
| ion transporter | DWZ36_07395 | Not Available | Negative | 1786191 - 1786949 | 28932.1 |
| port family protein | DWZ36_07400 | Not Available | Negative | 1787117 - 1787794 | 25186.4 |
| mechanosensitive ion channel family protein | DWZ36_07405 | Not Available | Negative | 1787828 - 1788673 | 30929.2 |
| alpha-1,2-fucosyltransferase | DWZ36_07415 | Not Available | Positive | 1789584 - 1790429 | 33698.5 |
| sodium ion-translocating decarboxylase subunit beta | DWZ36_07425 | Not Available | Negative | 1791653 - 1792888 | 44261.9 |
| oxaloacetate decarboxylase | DWZ36_07430 | Not Available | Negative | 1792888 - 1794750 | 69025.7 |
| oxaloacetate decarboxylase | DWZ36_07435 | Not Available | Negative | 1794781 - 1795032 | 8725.21 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

