Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hded family acid-resistance protein | DWZ36_07330 | Not Available | Positive | 1771669 - 1772232 | 20986.6 |
| translocation/assembly module tamb | DWZ36_07335 | Not Available | Positive | 1772297 - 1776757 | 166353.0 |
| agmatine deiminase family protein | DWZ36_07340 | Not Available | Positive | 1776812 - 1777837 | 39288.6 |
| acyltransferase | DWZ36_07345 | Not Available | Positive | 1777849 - 1778736 | 33260.4 |
| duf4251 domain-containing protein | DWZ36_07350 | Not Available | Positive | 1778851 - 1779441 | 21487.3 |
| methylated-dna--[protein]-cysteine s-methyltransferase | DWZ36_07355 | Not Available | Negative | 1779535 - 1780062 | 19617.8 |
| aspartate--trna(asp/asn) ligase | DWZ36_07360 | Not Available | Negative | 1780237 - 1782000 | 66472.9 |
| thioredoxin | DWZ36_07365 | Not Available | Negative | 1782129 - 1782425 | 11450.8 |
| duf2023 family protein | DWZ36_07370 | Not Available | Negative | 1782758 - 1783102 | 13416.7 |
| flavodoxin flda | DWZ36_07375 | Not Available | Negative | 1783119 - 1783622 | 17905.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

