Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 15 protein | DWZ36_07170 | Not Available | Positive | 1736863 - 1738650 | 69848.9 |
| class a beta-lactamase, subclass a2 | DWZ36_07175 | Not Available | Positive | 1738709 - 1739668 | 36198.6 |
| n-acetyltransferase | DWZ36_07180 | Not Available | Positive | 1739723 - 1740178 | 17391.2 |
| class i sam-dependent methyltransferase | DWZ36_07185 | Not Available | Positive | 1740450 - 1741238 | 29776.4 |
| nudix hydrolase | DWZ36_07190 | Not Available | Negative | 1741345 - 1741899 | 21545.7 |
| duf5131 family protein | DWZ36_07195 | Not Available | Positive | 1742105 - 1742872 | 29967.7 |
| sensor protein kdpd | DWZ36_07200 | Not Available | Positive | 1743052 - 1744179 | 42652.1 |
| pas domain-containing sensor histidine kinase | DWZ36_07205 | Not Available | Positive | 1744192 - 1745661 | 55121.1 |
| methyltransferase | DWZ36_07210 | Not Available | Negative | 1745732 - 1746400 | 24548.2 |
| dna recombination protein rmuc | DWZ36_07215 | Not Available | Negative | 1746418 - 1747653 | 46960.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

