Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ36_00660 | Not Available | Positive | 142325 - 143020 | 26753.6 |
| glycoside hydrolase family 92 protein | DWZ36_00665 | Not Available | Positive | 143114 - 145336 | 83529.0 |
| rna polymerase sigma-70 factor | DWZ36_00670 | Not Available | Positive | 145541 - 146116 | 22518.4 |
| duf4974 domain-containing protein | DWZ36_00675 | Not Available | Positive | 146145 - 147137 | 38023.8 |
| glycoside hydrolase family 92 protein | DWZ36_00680 | Not Available | Positive | 147155 - 149437 | 86472.6 |
| glycoside hydrolase family 92 protein | DWZ36_00685 | Not Available | Positive | 149467 - 151779 | 87838.7 |
| susc/raga family tonb-linked outer membrane protein | DWZ36_00695 | Not Available | Positive | 152068 - 155469 | 125003.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DWZ36_00700 | Not Available | Positive | 155493 - 157262 | 66896.9 |
| endonuclease | DWZ36_00705 | Not Available | Positive | 157306 - 158151 | 31946.9 |
| glycoside hydrolase family 97 protein | DWZ36_00710 | Not Available | Positive | 158339 - 160354 | 75845.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

