Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex transferase subunit tsad | DWZ36_07070 | Not Available | Negative | 1715713 - 1716732 | 36941.3 |
| type i methionyl aminopeptidase | DWZ36_07075 | Not Available | Negative | 1716756 - 1717610 | 31838.1 |
| hypothetical protein | DWZ36_07080 | Not Available | Positive | 1717847 - 1718065 | 8234.71 |
| sugar o-acetyltransferase | DWZ36_07085 | Not Available | Negative | 1718125 - 1718676 | 20098.3 |
| dmt family transporter | DWZ36_07090 | Not Available | Negative | 1718689 - 1719597 | 34069.1 |
| glycine/betaine abc transporter substrate-binding protein | DWZ36_07095 | Not Available | Negative | 1719742 - 1720584 | 31666.2 |
| proline/glycine betaine abc transporter permease | DWZ36_07100 | Not Available | Negative | 1720587 - 1721411 | 29538.8 |
| glycine betaine/l-proline abc transporter atp-binding protein | DWZ36_07105 | Not Available | Negative | 1721408 - 1722634 | 45636.3 |
| sigma-54-dependent fis family transcriptional regulator | DWZ36_07110 | Not Available | Positive | 1722936 - 1724273 | 50007.5 |
| o-acetyl-adp-ribose deacetylase | DWZ36_07115 | Not Available | Negative | 1724621 - 1725247 | 22653.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

