Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DWZ36_06920 | Not Available | Negative | 1682385 - 1685606 | 116966.0 |
| xylanase | DWZ36_06925 | Not Available | Positive | 1685888 - 1687273 | 51168.5 |
| hybrid sensor histidine kinase/response regulator | DWZ36_06930 | Not Available | Positive | 1687409 - 1691341 | 149275.0 |
| rna-binding protein | DWZ36_06935 | Not Available | Positive | 1691607 - 1691852 | 9144.0 |
| threonine/serine exporter family protein | DWZ36_06940 | Not Available | Negative | 1691952 - 1693298 | 50204.2 |
| pasta domain-containing protein | DWZ36_06945 | Not Available | Positive | 1693448 - 1694089 | 23471.9 |
| rlua family pseudouridine synthase | DWZ36_06950 | Not Available | Positive | 1694108 - 1695181 | 40774.7 |
| d-alanine--d-alanine ligase | DWZ36_06955 | Not Available | Positive | 1695178 - 1696152 | 36067.1 |
| acyltransferase | DWZ36_06960 | Not Available | Positive | 1696181 - 1697338 | 44510.6 |
| hypothetical protein | DWZ36_06965 | Not Available | Positive | 1697397 - 1698047 | 24878.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

