Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DWZ36_06760 | Not Available | Negative | 1633170 - 1636271 | 114541.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_06765 | Not Available | Negative | 1636675 - 1638699 | 76769.4 |
| tonb-dependent receptor | DWZ36_06770 | Not Available | Negative | 1638715 - 1642023 | 123727.0 |
| hybrid sensor histidine kinase/response regulator | DWZ36_06775 | Not Available | Positive | 1642342 - 1646376 | 153361.0 |
| duf3810 domain-containing protein | DWZ36_06780 | Not Available | Negative | 1646594 - 1647634 | 40933.9 |
| duf2264 domain-containing protein | DWZ36_06785 | Not Available | Negative | 1647776 - 1650091 | 88824.0 |
| neuraminidase | DWZ36_06790 | Not Available | Negative | 1650183 - 1651457 | 49248.1 |
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | DWZ36_06795 | Not Available | Negative | 1651880 - 1653178 | 48354.2 |
| dihydropteroate synthase | DWZ36_06800 | Not Available | Positive | 1653297 - 1654154 | 32002.9 |
| tigr00159 family protein | DWZ36_06805 | Not Available | Positive | 1654186 - 1654950 | 28478.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

