Phocaeicola vulgatus strain AF31-3

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AF31-3 is a Gram-positive, anaerobic, non-motile rod-shaped bacterium. This strain is characterized by its single-cell arrangement and is known to inhabit host-associated environments, specifically within Homo sapiens. It possesses a unique structural feature of having two membranes and a single replicon, which is typical for certain bacterial species. As a mesophilic organism, P. vulgatus strain AF31-3 thrives within moderate temperature ranges, making it well-suited for the human microbiome. Its biotic relationship is classified as free-living, indicating that it can exist independently but also interacts with its host. The strain is cataloged under the accession number QRQI00000000.1, providing a reference for further genetic and phenotypic studies. The presence of P. vulgatus in the human gut microbiota suggests its potential role in maintaining gut health, possibly through contributions to digestion or modulation of the immune system. This bacterium's adaptability to anaerobic conditions highlights its importance in the gut environment, where oxygen levels are low, and its structural characteristics may facilitate interactions within the complex microbial community. Understanding P. vulgatus and its ecological niche could provide insights into the dynamics of gut microbiota and their influence on human health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AF31-3

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AF31-3
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AF31-3 AF31-3.Scaf161, whole genome

Gene Summary

Adenine Count

1484022 bp

Thymine Count

1483399 bp

Guanine Count

1069820 bp

Cytosine Count

1074558 bp

Genome Length

5112322 bp

Protein-coding Genes

4162 genes

Non-Coding Genes

72 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
beta-glycosidaseDWZ36_06700Not AvailableNegative1609868 - 161137657900.6
ragb/susd family nutrient uptake outer membrane proteinDWZ36_06705Not AvailableNegative1611482 - 161322467464.8
duf4974 domain-containing proteinDWZ36_06715Not AvailableNegative1616666 - 161761036240.7
rna polymerase sigma-70 factorDWZ36_06720Not AvailableNegative1617684 - 161824422092.4
tonb-dependent receptorDWZ36_06730Not AvailablePositive1621474 - 1624545113213.0
ragb/susd family nutrient uptake outer membrane proteinDWZ36_06735Not AvailablePositive1624558 - 162611158484.6
glycoside hydrolaseDWZ36_06740Not AvailableNegative1626231 - 162723237779.3
beta-glucanaseDWZ36_06745Not AvailableNegative1627557 - 162869942528.2
beta-xylosidaseDWZ36_06750Not AvailableNegative1628724 - 163118093990.6
ragb/susd family nutrient uptake outer membrane proteinDWZ36_06755Not AvailableNegative1631465 - 163315663001.2

Displaying genes 1301 – 1310 of 4234 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.