Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix transcriptional regulator | DWZ36_00610 | Not Available | Positive | 133076 - 133846 | 29509.5 |
| phosphoglycerate mutase family protein | DWZ36_00615 | Not Available | Negative | 133864 - 134448 | 22907.3 |
| mate family efflux transporter | DWZ36_00620 | Not Available | Negative | 134563 - 135855 | 48419.7 |
| hypothetical protein | DWZ36_00625 | Not Available | Negative | 136070 - 136909 | 32293.0 |
| leucyl/phenylalanyl-trna--protein transferase | DWZ36_00630 | Not Available | Negative | 137050 - 137703 | 24968.2 |
| aaa family atpase | DWZ36_00635 | Not Available | Negative | 137799 - 140027 | 83031.5 |
| atp-dependent clp protease adaptor clps | DWZ36_00640 | Not Available | Negative | 140045 - 140353 | 12034.5 |
| general stress protein | DWZ36_00645 | Not Available | Negative | 140582 - 140989 | 15299.3 |
| arac family transcriptional regulator | DWZ36_00650 | Not Available | Negative | 141063 - 141878 | 31074.5 |
| hypothetical protein | DWZ36_00655 | Not Available | Negative | 141887 - 142165 | 10451.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

