Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-54 factor | DWZ36_06495 | Not Available | Positive | 1562596 - 1564065 | 56144.2 |
| pap2 family protein | DWZ36_06500 | Not Available | Positive | 1564076 - 1564732 | 24809.8 |
| glycine cleavage system protein h | DWZ36_06505 | Not Available | Positive | 1564769 - 1565149 | 14151.4 |
| 5-(carboxyamino)imidazole ribonucleotide mutase | DWZ36_06510 | Not Available | Positive | 1565274 - 1565783 | 17745.0 |
| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) | DWZ36_06515 | Not Available | Positive | 1565867 - 1567711 | 68190.6 |
| glutaminase | DWZ36_06520 | Not Available | Positive | 1567725 - 1568639 | 34090.9 |
| rna-binding protein | DWZ36_06525 | Not Available | Negative | 1568954 - 1569325 | 13160.2 |
| hypothetical protein | DWZ36_06530 | Not Available | Positive | 1569446 - 1569655 | 8019.02 |
| peptidase m23 | DWZ36_06540 | Not Available | Negative | 1569827 - 1571161 | 50695.0 |
| duf4292 domain-containing protein | DWZ36_06545 | Not Available | Negative | 1571161 - 1571994 | 31437.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

