Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rubredoxin | DWZ36_06445 | Not Available | Negative | 1551618 - 1551782 | 5868.75 |
| nad-dependent deacylase | DWZ36_06450 | Not Available | Negative | 1551857 - 1552555 | 25688.9 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | DWZ36_06455 | Not Available | Positive | 1552683 - 1553267 | 21446.7 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | DWZ36_06460 | Not Available | Positive | 1553289 - 1554155 | 31372.7 |
| na+-dependent phosphate transporter | DWZ36_06465 | Not Available | Negative | 1554234 - 1554608 | 14304.9 |
| na/pi cotransporter family protein | DWZ36_06470 | Not Available | Negative | 1554800 - 1556491 | 62887.8 |
| nucleoside kinase | DWZ36_06475 | Not Available | Positive | 1556573 - 1558246 | 64724.8 |
| glycyl radical protein | DWZ36_06480 | Not Available | Positive | 1558548 - 1560974 | 91924.5 |
| glycyl-radical enzyme activating protein | DWZ36_06485 | Not Available | Positive | 1560979 - 1561887 | 33578.1 |
| xaa-pro aminopeptidase | DWZ36_06490 | Not Available | Negative | 1562237 - 1562467 | 8880.34 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

