Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ36_06345 | Not Available | Negative | 1534922 - 1535272 | 13439.4 |
| tonb-dependent receptor | DWZ36_06350 | Not Available | Negative | 1535276 - 1537582 | 86213.5 |
| hypothetical protein | DWZ36_06355 | Not Available | Negative | 1537607 - 1537945 | 12594.3 |
| duf3784 domain-containing protein | DWZ36_06360 | Not Available | Negative | 1538250 - 1538567 | 11703.0 |
| cell filamentation protein fic | DWZ36_06365 | Not Available | Negative | 1538579 - 1539049 | 18215.1 |
| integrase | DWZ36_06370 | Not Available | Positive | 1539018 - 1539620 | 22660.3 |
| duf1016 family protein | DWZ36_06375 | Not Available | Positive | 1539646 - 1540785 | 44147.1 |
| crp/fnr family transcriptional regulator | DWZ36_06380 | Not Available | Positive | 1541099 - 1541662 | 22004.4 |
| nudix domain-containing protein | DWZ36_06385 | Not Available | Positive | 1541743 - 1542369 | 24165.9 |
| had family hydrolase | DWZ36_06390 | Not Available | Positive | 1542382 - 1543002 | 23148.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

