Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arac family transcriptional regulator | DWZ36_06235 | Not Available | Negative | 1511786 - 1512274 | 18915.8 |
| hypothetical protein | DWZ36_06240 | Not Available | Negative | 1512817 - 1512939 | 4325.11 |
| 3-deoxy-d-manno-octulosonic acid transferase | DWZ36_06245 | Not Available | Negative | 1513478 - 1514698 | 46874.5 |
| glutamate--trna ligase | DWZ36_06250 | Not Available | Negative | 1514711 - 1516228 | 57877.2 |
| hdig domain-containing protein | DWZ36_06255 | Not Available | Positive | 1516310 - 1518367 | 79191.8 |
| low molecular weight phosphotyrosine protein phosphatase | DWZ36_06260 | Not Available | Negative | 1518342 - 1518812 | 17874.5 |
| phosphatase | DWZ36_06265 | Not Available | Negative | 1518820 - 1519530 | 26532.1 |
| primosomal protein n' | DWZ36_06270 | Not Available | Negative | 1519578 - 1522040 | 93875.1 |
| porin family protein | DWZ36_06275 | Not Available | Negative | 1522113 - 1522712 | 21518.2 |
| duf2795 domain-containing protein | DWZ36_06280 | Not Available | Negative | 1522876 - 1523097 | 8716.91 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

