Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-galactosidase | DWZ36_00555 | Not Available | Positive | 118378 - 120534 | 82572.3 |
| rna polymerase sigma-70 factor | DWZ36_00560 | Not Available | Positive | 121429 - 122019 | 23527.4 |
| duf4974 domain-containing protein | DWZ36_00565 | Not Available | Positive | 122080 - 123078 | 38231.8 |
| susc/raga family tonb-linked outer membrane protein | DWZ36_00570 | Not Available | Positive | 123236 - 126532 | 122114.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_00575 | Not Available | Positive | 126563 - 128005 | 53772.6 |
| s9 family peptidase | DWZ36_00580 | Not Available | Positive | 128038 - 129075 | 39576.7 |
| hypothetical protein | DWZ36_00585 | Not Available | Positive | 129309 - 130388 | 40814.7 |
| Trna-phe | Not Available | Not Available | Positive | 130807 - 130882 | Not Available |
| Trna-pro | Not Available | Not Available | Positive | 131063 - 131135 | Not Available |
| alpha-galactosidase | DWZ36_00605 | Not Available | Positive | 131418 - 133025 | 60393.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

