Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf5107 domain-containing protein | DWZ36_00500 | Not Available | Positive | 92409 - 95750 | 128368.0 |
| glycoside hydrolase family 97 protein | DWZ36_00505 | Not Available | Positive | 95747 - 97732 | 75319.2 |
| hybrid sensor histidine kinase/response regulator | DWZ36_00510 | Not Available | Positive | 97816 - 101853 | 154587.0 |
| alpha-galactosidase | DWZ36_00515 | Not Available | Positive | 102057 - 104084 | 76195.4 |
| tonb-dependent receptor | DWZ36_00520 | Not Available | Positive | 104124 - 107177 | 113338.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_00525 | Not Available | Positive | 107223 - 108842 | 61972.6 |
| galactose mutarotase | DWZ36_00530 | Not Available | Positive | 108932 - 109954 | 38668.4 |
| beta-mannosidase | DWZ36_00535 | Not Available | Positive | 109984 - 112926 | 111423.0 |
| 9-o-acetylesterase | DWZ36_00545 | Not Available | Positive | 115329 - 117281 | 72974.1 |
| arac family transcriptional regulator | DWZ36_00550 | Not Available | Negative | 117294 - 118190 | 34794.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

