Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acetylmuramoyl-l-alanine amidase | DWZ36_05320 | Not Available | Negative | 1354621 - 1355139 | 19546.6 |
| dna-binding protein | DWZ36_05325 | Not Available | Negative | 1355587 - 1356081 | 18040.5 |
| hypothetical protein | DWZ36_05330 | Not Available | Negative | 1356121 - 1356351 | 8466.23 |
| duf4248 domain-containing protein | DWZ36_05335 | Not Available | Negative | 1356450 - 1356644 | 7367.08 |
| duf3987 domain-containing protein | DWZ36_05340 | Not Available | Negative | 1357034 - 1358839 | 67498.1 |
| virulence protein e | DWZ36_05345 | Not Available | Negative | 1358912 - 1359577 | 25081.9 |
| hypothetical protein | DWZ36_05350 | Not Available | Positive | 1359852 - 1360049 | 7933.8 |
| dna polymerase subunit beta | DWZ36_05355 | Not Available | Positive | 1360127 - 1360420 | 11114.5 |
| duf86 domain-containing protein | DWZ36_05360 | Not Available | Positive | 1360413 - 1360805 | 15191.7 |
| aaa family atpase | DWZ36_05365 | Not Available | Positive | 1360930 - 1362498 | 59978.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

