Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate--ammonia ligase | DWZ36_05265 | Not Available | Positive | 1342812 - 1343852 | 39770.2 |
| uracil-dna glycosylase | DWZ36_05270 | Not Available | Positive | 1343970 - 1344632 | 24957.5 |
| lps-assembly protein lptd | DWZ36_05275 | Not Available | Negative | 1344709 - 1347444 | 103895.0 |
| hdig domain-containing protein | DWZ36_05280 | Not Available | Negative | 1347535 - 1348071 | 20311.5 |
| duf1343 domain-containing protein | DWZ36_05285 | Not Available | Positive | 1348125 - 1349285 | 43609.9 |
| s26 family signal peptidase | DWZ36_05290 | Not Available | Negative | 1349313 - 1349780 | 18071.4 |
| hypothetical protein | DWZ36_05295 | Not Available | Negative | 1349749 - 1350663 | 33739.3 |
| abc transporter atp-binding protein | DWZ36_05300 | Not Available | Negative | 1350647 - 1352299 | 61635.1 |
| hypothetical protein | DWZ36_05305 | Not Available | Negative | 1352307 - 1353413 | 42001.1 |
| pqqd family protein | DWZ36_05310 | Not Available | Negative | 1353418 - 1353687 | 10086.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

