Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cyclically-permuted mutarotase family protein | DWZ36_05215 | Not Available | Negative | 1324670 - 1325797 | 40509.5 |
| beta-n-acetylhexosaminidase | DWZ36_05220 | Not Available | Negative | 1325984 - 1328308 | 86341.0 |
| glycoside hydrolase family 2 protein | DWZ36_05225 | Not Available | Negative | 1328325 - 1330892 | 98692.7 |
| sialate o-acetylesterase | DWZ36_05230 | Not Available | Negative | 1330919 - 1332982 | 77630.1 |
| sialate o-acetylesterase | DWZ36_05235 | Not Available | Negative | 1332979 - 1333644 | 25131.8 |
| beta-n-acetylhexosaminidase | DWZ36_05240 | Not Available | Negative | 1333646 - 1335652 | 77164.5 |
| sialidase | DWZ36_05245 | Not Available | Negative | 1335656 - 1337296 | 60315.2 |
| susd family outer membrane lipoprotein nanu | DWZ36_05250 | Not Available | Negative | 1337429 - 1338931 | 57012.6 |
| tonb-dependent receptor | DWZ36_05255 | Not Available | Negative | 1338951 - 1342226 | 121669.0 |
| Trna-arg | Not Available | Not Available | Positive | 1342535 - 1342609 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

