Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rok family transcriptional regulator | DWZ36_05115 | Not Available | Negative | 1297178 - 1298383 | 44586.1 |
| n-acetylneuraminate lyase | DWZ36_05120 | Not Available | Positive | 1298689 - 1299603 | 33910.9 |
| n-acylglucosamine 2-epimerase | DWZ36_05125 | Not Available | Positive | 1299616 - 1300812 | 46212.1 |
| mfs transporter | DWZ36_05130 | Not Available | Positive | 1300831 - 1302066 | 44685.5 |
| glucosamine-6-phosphate deaminase | DWZ36_05135 | Not Available | Positive | 1302112 - 1302903 | 29021.6 |
| glucosamine-6-phosphate deaminase | DWZ36_05140 | Not Available | Positive | 1302907 - 1304895 | 74771.3 |
| tigr02757 family protein | DWZ36_05145 | Not Available | Negative | 1305071 - 1305835 | 29921.8 |
| arac family transcriptional regulator | DWZ36_05150 | Not Available | Negative | 1305901 - 1306779 | 34389.8 |
| efflux rnd transporter periplasmic adaptor subunit | DWZ36_05155 | Not Available | Positive | 1306956 - 1308023 | 39289.3 |
| acrb/acrd/acrf family protein | DWZ36_05160 | Not Available | Positive | 1308023 - 1311148 | 115863.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

