Segatella copri strain AF38-11

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Prevotellaceae

Genus

Segatella

Description

Segatella copri strain AF38-11 is a Gram-negative, anaerobic, rod-shaped bacterium that inhabits the human gut. This organism is notable for its specific association with Homo sapiens, highlighting its role in the human microbiome. The strain is characterized by having a single replicon, which may suggest a streamlined genetic organization that could be advantageous for its survival and function within the complex gut environment. The anaerobic nature of Segatella copri indicates that it thrives in the absence of oxygen, which is characteristic of many gut microbiota that contribute to the fermentation processes and overall metabolic activities within the intestinal tract. Understanding the traits of Segatella copri strain AF38-11 can provide insights into its potential roles in human health and disease. Given its specific habitat and association with humans, studying this bacterium could reveal important information about its contributions to gut health, metabolism, and interactions with other microbial species in the gut ecosystem. The knowledge of its accession number, QROP00000000.1, allows for further research and reference in genomic studies that could elucidate its functional capabilities and ecological significance within the human microbiome.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPrevotellaceae
GenusSegatella
SpeciesSegatella copri
Strainstrain AF38-11

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Segatella copri strain AF38-11 AF38-11.Scaf114, whole genome

Gene Summary

Adenine Count

1003111 bp

Thymine Count

1024665 bp

Guanine Count

834115 bp

Cytosine Count

823133 bp

Genome Length

3686043 bp

Protein-coding Genes

2868 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rpn family recombination-promoting nuclease/putative transposaseDW026_04920Not AvailablePositive1199848 - 120076835799.8
deda family proteinDW026_04925Not AvailableNegative1200896 - 120153723838.4
glutamine--trna ligase/yqey domain fusion proteinDW026_04930Not AvailableNegative1201601 - 120331665953.9
hypothetical proteinDW026_04935Not AvailableNegative1203594 - 120394412464.7
phosphatase pap2 family proteinDW026_04940Not AvailableNegative1204051 - 120474927074.6
alkaline phosphatase family proteinDW026_04945Not AvailableNegative1204820 - 120673072607.9
arac family transcriptional regulatorDW026_04950Not AvailablePositive1206914 - 120733616555.7
sigma-70 family rna polymerase sigma factorDW026_04955Not AvailableNegative1207432 - 120804923336.3
pd-(d/e)xk nuclease family proteinDW026_04960Not AvailableNegative1208152 - 1211139115420.0
dna helicase uvrdDW026_04965Not AvailableNegative1211216 - 1214428124026.0

Displaying genes 961 – 970 of 2941 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.