Segatella copri strain AF38-11

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Prevotellaceae

Genus

Segatella

Description

Segatella copri strain AF38-11 is a Gram-negative, anaerobic, rod-shaped bacterium that inhabits the human gut. This organism is notable for its specific association with Homo sapiens, highlighting its role in the human microbiome. The strain is characterized by having a single replicon, which may suggest a streamlined genetic organization that could be advantageous for its survival and function within the complex gut environment. The anaerobic nature of Segatella copri indicates that it thrives in the absence of oxygen, which is characteristic of many gut microbiota that contribute to the fermentation processes and overall metabolic activities within the intestinal tract. Understanding the traits of Segatella copri strain AF38-11 can provide insights into its potential roles in human health and disease. Given its specific habitat and association with humans, studying this bacterium could reveal important information about its contributions to gut health, metabolism, and interactions with other microbial species in the gut ecosystem. The knowledge of its accession number, QROP00000000.1, allows for further research and reference in genomic studies that could elucidate its functional capabilities and ecological significance within the human microbiome.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPrevotellaceae
GenusSegatella
SpeciesSegatella copri
Strainstrain AF38-11

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Segatella copri strain AF38-11 AF38-11.Scaf114, whole genome

Gene Summary

Adenine Count

1003111 bp

Thymine Count

1024665 bp

Guanine Count

834115 bp

Cytosine Count

823133 bp

Genome Length

3686043 bp

Protein-coding Genes

2868 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
d-xylose transporter xyleDW026_02990Not AvailablePositive775669 - 77712052619.3
hypothetical proteinDW026_03000Not AvailablePositive778029 - 77846916697.9
duf4840 domain-containing proteinDW026_03005Not AvailableNegative778823 - 77951526179.0
dna/rna non-specific endonucleaseDW026_03010Not AvailablePositive779945 - 78082932769.0
Trna-lysNot AvailableNot AvailablePositive781136 - 781208Not Available
ai-2e family transporterDW026_03020Not AvailableNegative781287 - 78241442400.3
thymidine kinaseDW026_03025Not AvailableNegative782429 - 78301321479.0
16s rrna (cytidine(1402)-2'-o)-methyltransferaseDW026_03030Not AvailablePositive783109 - 78387328557.3
hypothetical proteinDW026_03035Not AvailablePositive783944 - 78479532059.4
nucleoside deaminaseDW026_03040Not AvailableNegative784796 - 78524216500.9

Displaying genes 581 – 590 of 2941 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.