Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DW150_12255 | Not Available | Negative | 3076226 - 3078202 | 74952.3 |
| tonb-dependent receptor | DW150_12260 | Not Available | Negative | 3078221 - 3081403 | 118467.0 |
| lrp/asnc family transcriptional regulator | DW150_12270 | Not Available | Negative | 3081652 - 3082122 | 17926.7 |
| hypothetical protein | DW150_12275 | Not Available | Positive | 3082331 - 3082756 | 15989.3 |
| deda family protein | DW150_12280 | Not Available | Positive | 3082897 - 3083541 | 24520.6 |
| duf47 family protein | DW150_12285 | Not Available | Positive | 3083581 - 3084228 | 25095.3 |
| anion permease | DW150_12290 | Not Available | Positive | 3084245 - 3085264 | 36150.1 |
| hypothetical protein | DW150_12295 | Not Available | Positive | 3085398 - 3085760 | 13888.1 |
| tonb-dependent receptor | DW150_12300 | Not Available | Positive | 3085809 - 3087968 | 82023.7 |
| duf4625 domain-containing protein | DW150_12305 | Not Available | Positive | 3087965 - 3088459 | 18152.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

