Phocaeicola vulgatus strain AM13-21

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AM13-21 is a Gram-positive, rod-shaped bacterium classified as an anaerobe, indicating that it thrives in environments devoid of oxygen. This strain is host-associated, specifically found in Homo sapiens, and is characterized by a free-living biotic relationship. Its cellular arrangement consists of singles, and it does not exhibit mobility, as indicated by the absence of flagella, despite their presence in the species description. The strain is mesophilic, which suggests that it grows optimally at moderate temperatures. Phocaeicola vulgatus strain AM13-21 contains one replicon and is surrounded by two membranes, a trait commonly associated with certain bacterial groups. The accessions for this strain are cataloged under QRLF00000000.1. The ecological role of Phocaeicola vulgatus strain AM13-21 highlights its significance in the human microbiome. As a member of the gut microbiota, it likely contributes to various biological processes, including digestion and maintaining gut health. The presence of this anaerobic bacterium underscores the complexity and interdependence of microbial communities within human hosts, emphasizing the importance of understanding such organisms in the context of human health and disease.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AM13-21

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AM13-21
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AM13-21


Gene Summary

Adenine Count

1539821 bp

Thymine Count

1499100 bp

Guanine Count

1070173 bp

Cytosine Count

1133878 bp

Genome Length

5243870 bp

Protein-coding Genes

4129 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ragb/susd family nutrient uptake outer membrane proteinDW150_00005Not AvailableNegative296 - 181957970.0
tonb-dependent receptorDW150_00010Not AvailableNegative1837 - 4767108859.0
ragb/susd family nutrient uptake outer membrane proteinDW150_00015Not AvailableNegative4995 - 649156632.5
tonb-dependent receptorDW150_00020Not AvailableNegative6504 - 9395106923.0
site-specific integraseDW150_00030Not AvailablePositive10065 - 1122545012.8
susc/raga family tonb-linked outer membrane proteinDW150_00040Not AvailablePositive12653 - 15607108928.0
susd/ragb family nutrient-binding outer membrane lipoproteinDW150_00045Not AvailablePositive15635 - 1708353273.6
hypothetical proteinDW150_00050Not AvailableNegative17167 - 173647797.34
tonb-dependent receptorDW150_00055Not AvailablePositive18070 - 20922105731.0
ragb/susd family nutrient uptake outer membrane proteinDW150_00060Not AvailablePositive21024 - 2256557979.1

Displaying genes 1 – 10 of 4204 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.