Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sialidase | DW150_11830 | Not Available | Positive | 2947373 - 2949082 | 63977.8 |
| hypothetical protein | DW150_11835 | Not Available | Negative | 2949068 - 2949256 | 7431.94 |
| 3-deoxy-7-phosphoheptulonate synthase | DW150_11840 | Not Available | Negative | 2949285 - 2950352 | 39929.6 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | DW150_11845 | Not Available | Negative | 2950372 - 2951556 | 45052.1 |
| prephenate dehydratase | DW150_11850 | Not Available | Negative | 2951531 - 2952373 | 31728.1 |
| transcriptional regulator | DW150_11855 | Not Available | Negative | 2952631 - 2952987 | 13384.4 |
| protease | DW150_11860 | Not Available | Positive | 2953177 - 2953707 | 18938.9 |
| pyridoxal phosphate-dependent aminotransferase | DW150_11865 | Not Available | Positive | 2953776 - 2954954 | 44855.3 |
| ai-2e family transporter | DW150_11870 | Not Available | Negative | 2954955 - 2955956 | 37000.0 |
| tetratricopeptide repeat protein | DW150_11875 | Not Available | Negative | 2956016 - 2956966 | 35709.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

