Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-oxo acid dehydrogenase subunit e2 | DW150_11725 | Not Available | Positive | 2920806 - 2922161 | 49474.3 |
| 2-oxoisovalerate dehydrogenase | DW150_11730 | Not Available | Positive | 2922190 - 2924223 | 75561.7 |
| flavodoxin | DW150_11735 | Not Available | Positive | 2924296 - 2924820 | 19445.1 |
| fad-binding protein | DW150_11740 | Not Available | Negative | 2924906 - 2926549 | 60784.8 |
| duf1847 domain-containing protein | DW150_11745 | Not Available | Negative | 2926564 - 2927205 | 24003.9 |
| dna repair protein rada | DW150_11750 | Not Available | Negative | 2927251 - 2928618 | 49904.5 |
| flavodoxin family protein | DW150_11755 | Not Available | Negative | 2928717 - 2929253 | 19947.0 |
| duf3078 domain-containing protein | DW150_11760 | Not Available | Positive | 2929447 - 2930328 | 32730.9 |
| bifunctional aspartate kinase/homoserine dehydrogenase i | DW150_11765 | Not Available | Positive | 2930926 - 2933358 | 88553.6 |
| cofactor-independent phosphoglycerate mutase | DW150_11770 | Not Available | Positive | 2933363 - 2934574 | 44511.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

