Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acrb/acrd/acrf family protein | DW150_11670 | Not Available | Positive | 2904712 - 2907795 | 112371.0 |
| tolc family protein | DW150_11675 | Not Available | Positive | 2907805 - 2908974 | 43895.6 |
| gfo/idh/moca family oxidoreductase | DW150_11685 | Not Available | Negative | 2909442 - 2911004 | 58101.8 |
| homoserine o-succinyltransferase | DW150_11690 | Not Available | Positive | 2911387 - 2912304 | 35746.9 |
| u32 family peptidase | DW150_11695 | Not Available | Positive | 2912301 - 2914130 | 69841.0 |
| zinc ribbon domain-containing protein | DW150_11700 | Not Available | Positive | 2914117 - 2915079 | 36953.1 |
| tonb-dependent receptor | DW150_11705 | Not Available | Negative | 2915319 - 2917742 | 91980.9 |
| luxr family transcriptional regulator | DW150_11710 | Not Available | Negative | 2917912 - 2918532 | 23353.5 |
| dihydrolipoyl dehydrogenase | DW150_11715 | Not Available | Positive | 2918640 - 2919989 | 48302.0 |
| lipoate--protein ligase family protein | DW150_11720 | Not Available | Positive | 2919989 - 2920741 | 28914.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

