Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4091 domain-containing protein | DW150_11255 | Not Available | Negative | 2786626 - 2788374 | 66602.4 |
| ahpc/tsa family protein | DW150_11260 | Not Available | Positive | 2788508 - 2789503 | 37151.8 |
| hypothetical protein | DW150_11265 | Not Available | Negative | 2789603 - 2790163 | 21343.8 |
| dicarboxylate/amino acid:cation symporter | DW150_11275 | Not Available | Negative | 2791775 - 2792956 | 42233.4 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DW150_11280 | Not Available | Negative | 2793192 - 2794805 | 60410.1 |
| susc/raga family tonb-linked outer membrane protein | DW150_11285 | Not Available | Negative | 2794824 - 2798240 | 125439.0 |
| fecr family protein | DW150_11290 | Not Available | Negative | 2798392 - 2799318 | 35862.1 |
| phosphoglycerate kinase | DW150_11295 | Not Available | Positive | 2799542 - 2800795 | 44034.9 |
| hypothetical protein | DW150_11300 | Not Available | Negative | 2800870 - 2802084 | 45633.3 |
| gamma-carboxymuconolactone decarboxylase | DW150_11305 | Not Available | Negative | 2802219 - 2803049 | 31082.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

