Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DW150_10875 | Not Available | Positive | 2673749 - 2675239 | 55884.7 |
| methylmalonyl-coa mutase | DW150_10880 | Not Available | Negative | 2675563 - 2677713 | 79083.7 |
| methylmalonyl-coa mutase small subunit | DW150_10885 | Not Available | Negative | 2677723 - 2679633 | 70522.5 |
| putative transporter | DW150_10890 | Not Available | Positive | 2679919 - 2681589 | 60199.9 |
| abc transporter atp-binding protein | DW150_10895 | Not Available | Positive | 2681705 - 2683339 | 61961.7 |
| rna polymerase sigma-70 factor | DW150_10900 | Not Available | Positive | 2683379 - 2683960 | 22680.5 |
| duf4974 domain-containing protein | DW150_10905 | Not Available | Positive | 2684091 - 2685077 | 38466.3 |
| susc/raga family tonb-linked outer membrane protein | DW150_10910 | Not Available | Positive | 2685224 - 2688640 | 126376.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_10915 | Not Available | Positive | 2688661 - 2690196 | 58902.3 |
| glycoside hydrolase | DW150_10920 | Not Available | Positive | 2690228 - 2692297 | 77996.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

