Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dde transposase | DW150_10675 | Not Available | Positive | 2621708 - 2622207 | 19008.1 |
| histidine ammonia-lyase | DW150_10680 | Not Available | Negative | 2622337 - 2623833 | 55135.9 |
| methenyltetrahydrofolate cyclohydrolase | DW150_10685 | Not Available | Negative | 2623869 - 2624492 | 22967.8 |
| imidazolonepropionase | DW150_10690 | Not Available | Negative | 2624513 - 2625757 | 44903.3 |
| glutamate formimidoyltransferase | DW150_10695 | Not Available | Negative | 2625772 - 2626674 | 33387.4 |
| formiminotransferase-cyclodeaminase | DW150_10700 | Not Available | Negative | 2626622 - 2626735 | 4348.15 |
| urocanate hydratase | DW150_10705 | Not Available | Negative | 2626757 - 2628754 | 74656.2 |
| wyl domain-containing protein | DW150_10710 | Not Available | Negative | 2628999 - 2630030 | 39951.7 |
| type i restriction endonuclease subunit r | DW150_10715 | Not Available | Negative | 2630058 - 2634083 | 154087.0 |
| duf1016 domain-containing protein | DW150_10720 | Not Available | Negative | 2634151 - 2635248 | 42251.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

