Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-xylosidase | DW150_10565 | Not Available | Negative | 2577418 - 2578962 | 57716.2 |
| hypothetical protein | DW150_10570 | Not Available | Negative | 2578975 - 2581044 | 78484.2 |
| glycoside hydrolase family 2 | DW150_10575 | Not Available | Negative | 2581170 - 2583797 | 100178.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_10580 | Not Available | Negative | 2583899 - 2585515 | 60173.1 |
| tonb-dependent receptor | DW150_10585 | Not Available | Negative | 2585561 - 2588614 | 113348.0 |
| hybrid sensor histidine kinase/response regulator | DW150_10590 | Not Available | Positive | 2588866 - 2592861 | 152182.0 |
| dna-3-methyladenine glycosylase i | DW150_10595 | Not Available | Positive | 2592963 - 2593541 | 22188.7 |
| hypothetical protein | DW150_10600 | Not Available | Negative | 2593929 - 2594345 | 16365.7 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_10605 | Not Available | Negative | 2594539 - 2596212 | 63490.4 |
| tonb-dependent receptor | DW150_10610 | Not Available | Negative | 2596227 - 2599214 | 110433.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

