Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM13-21 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1539821 bp
Thymine Count
1499100 bp
Guanine Count
1070173 bp
Cytosine Count
1133878 bp
Genome Length
5243870 bp
Protein-coding Genes
4129 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| calcium:sodium exchange protein | DW150_09990 | Not Available | Negative | 2419028 - 2420095 | 41479.4 |
| hypothetical protein | DW150_10000 | Not Available | Negative | 2420910 - 2421092 | 6813.45 |
| metallophosphoesterase | DW150_10005 | Not Available | Negative | 2421235 - 2421990 | 28077.1 |
| right-handed parallel beta-helix repeat-containing protein | DW150_10010 | Not Available | Negative | 2422028 - 2424217 | 82824.4 |
| hypothetical protein | DW150_10015 | Not Available | Negative | 2424369 - 2424599 | 9027.57 |
| hypothetical protein | DW150_10020 | Not Available | Negative | 2424719 - 2425945 | 47116.7 |
| hypothetical protein | DW150_10025 | Not Available | Negative | 2426061 - 2427275 | 45243.5 |
| ragb/susd family nutrient uptake outer membrane protein | DW150_10030 | Not Available | Negative | 2427316 - 2429316 | 75079.5 |
| susc/raga family tonb-linked outer membrane protein | DW150_10035 | Not Available | Negative | 2429328 - 2432843 | 130049.0 |
| duf4974 domain-containing protein | DW150_10040 | Not Available | Negative | 2433016 - 2434026 | 38577.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

